{ "_id": "6a1ed86eb401979e7340f0e3", "Package": "ampir", "Type": "Package", "Title": "Predict Antimicrobial Peptides", "Version": "1.1.0", "Date": "2021-06-29", "Authors@R": "c(person(\"Legana\",\"Fingerhut\",\nemail = \"legana.fingerhut@my.jcu.edu.au\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-2482-5336\")),\nperson(\"Ira\",\"Cooke\",\nemail = \"ira.cooke@jcu.edu.au\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-6520-1397\")),\nperson(\"Jinlong\",\"Zhang\",\nemail = \"jinlongzhang01@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(\"R/read_faa.R\")),\nperson(\"Nan\",\"Xiao\",\nemail = \"me@nanx.me\",\nrole = c(\"ctb\"),\ncomment = c(\"R/calc_pseudo_comp.R\")))", "Description": "A toolkit to predict antimicrobial peptides from protein\nsequences on a genome-wide scale. It incorporates two support\nvector machine models (\"precursor\" and \"mature\") trained on\npublicly available antimicrobial peptide data using calculated\nphysico-chemical and compositional sequence properties\ndescribed in Meher et al. (2017) . In\norder to support genome-wide analyses, these models are\ndesigned to accept any type of protein as input and calculation\nof compositional properties has been optimised for\nhigh-throughput use. For best results it is important to select\nthe model that accurately represents your sequence type: for\nfull length proteins, it is recommended to use the default\n\"precursor\" model. The alternative, \"mature\", model is best\nsuited for mature peptide sequences that represent the final\nantimicrobial peptide sequence after post-translational\nprocessing. For details see Fingerhut et al. (2020)\n. The 'ampir' package is\nalso available via a Shiny based GUI at\n.", "URL": "https://github.com/Legana/ampir", "License": "GPL-2", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://legana.r-universe.dev", "Date/Publication": "2021-06-29 04:15:52 UTC", "RemoteUrl": "https://github.com/legana/ampir", "RemoteRef": "HEAD", "RemoteSha": "93bcaa2d074d946eac5d66ef8d3640724e68d725", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-20 09:49:09 UTC", "User": "root" }, "Author": "Legana Fingerhut [aut, cre] (ORCID:\n),\nIra Cooke [aut] (ORCID: ),\nJinlong Zhang [ctb] (R/read_faa.R),\nNan Xiao [ctb] (R/calc_pseudo_comp.R)", "Maintainer": "Legana Fingerhut ", "MD5sum": "af27bab2473aabb42d917ad47861e135", "_user": "legana", "_type": "src", "_file": "ampir_1.1.0.tar.gz", "_fileid": "b7537ffb47fdc4b7ec6c99374503e59d7a53f041b123df763b59fa7659839c95", "_filesize": 1778254, 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